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Running COPASI biochemical simulations with HTCondor

Partnership to Advance Throughput Computing
125 subscribers
154 views 4 years ago
Learn how HTCondor can help improve biochemical simulations. COPASI is a widely used simulator for chemical and biochemical reaction networks, and several of its compute-intesive tasks benefit from parallelization. Researchers created a web-based system which facilitates transforming such tasks into smaller sub-tasks that can be run independently. This system then allows the user to submit these tasks to HTCondor from the web interface, and assembles the numerical results in their expected order. Ultimately, the end user never has to interact directly with HTCondor. Presented on May 25 by Pedro Mendes as part of HTCondor Week 2021. Slide decks are available here: https://agenda.hep.wisc.edu/event/157... Questions? We're happy to answer questions about the PATh Project and help researchers, campus computing providers, and research collaborations leverage both CHTC and OSG resources! Visit our contact page: https://path-cc.io/contact/ and contact us at support@opensciencegrid.org with any questions. ...more
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Running COPASI biochemical simulations with HTCondor
1Likes
154Views
2021Jun 14
Learn how HTCondor can help improve biochemical simulations. COPASI is a widely used simulator for chemical and biochemical reaction networks, and several of its compute-intesive tasks benefit from parallelization. Researchers created a web-based system which facilitates transforming such tasks into smaller sub-tasks that can be run independently. This system then allows the user to submit these tasks to HTCondor from the web interface, and assembles the numerical results in their expected order. Ultimately, the end user never has to interact directly with HTCondor. Presented on May 25 by Pedro Mendes as part of HTCondor Week 2021. Slide decks are available here: https://agenda.hep.wisc.edu/event/157... Questions? We're happy to answer questions about the PATh Project and help researchers, campus computing providers, and research collaborations leverage both CHTC and OSG resources! Visit our contact page: https://path-cc.io/contact/ and contact us at support@opensciencegrid.org with any questions.

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Partnership to Advance Throughput Computing

125 subscribers